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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16732649_16733400_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16732649 - 16733400
Intron Length:
752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACTA
5'SS Class:
strong_major
3'SS Sequence:
CCCCATTATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAC
U12 Branch Point Sequence:
TTTTCTTGACAA
Flanking Amino Acid:
EKEFSLSKRKHHCRNCGEIF
Intron Amino Acid Position:
544

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
74.1
36.4
Major BPS
73.9
0.59
1
65.3
41.6
Major PPT
67.3
0.39
0.9
65.1
35
Minor 5ss
34.9
-1.7
3.3
47.7
47.7
Minor BPS
56.1
0.19
1.8
73.41
38.3

Associated Gene:

Gene:
RUFY2
Ensembl Gene ID:
ENSAPLG00000015834
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016535
16732492 - 16757161
24670