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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16733479_16734410_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16733479 - 16734410
Intron Length:
932

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTAGG
5'SS Class:
major
3'SS Sequence:
TTTTTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATGATCT
Flanking Amino Acid:
DIKEANKALQGQVWLKDKEA
Intron Amino Acid Position:
518

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.2
64.8
46.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
95.2
1.02
0.5
89
28.1
Minor 5ss
30.1
-2.3
2.7
34.2
41.3
Minor BPS
49.8
0.07
2
75.25
40.9

Associated Gene:

Gene:
RUFY2
Ensembl Gene ID:
ENSAPLG00000015834
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016535
16732492 - 16757161
24670