About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16734460_16735898_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16734460 - 16735898
Intron Length:
1439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAATTATT
5'SS Class:
major
3'SS Sequence:
CTTTATTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTATCTTTATTT
Flanking Amino Acid:
ALQELASKLSESKLKIEDIK
Intron Amino Acid Position:
501

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
77.4
37.4
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
86
0.81
0.7
84.8
29.6
Minor 5ss
43
-0.8
2.8
57.1
41.2
Minor BPS
70.4
0.72
1.5
84.48
36.6

Associated Gene:

Gene:
RUFY2
Ensembl Gene ID:
ENSAPLG00000015834
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016535
16732492 - 16757161
24670