Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16747812_16749013_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16747812 - 16749013

Intron Length:

1202

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACTATTT

5'SS Class:

major

3'SS Sequence:

TTTTTTTTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CAAACAT

U12 Branch Point Sequence:

TTTTCCTTTTTT

Flanking Amino Acid:

EKSNTKLIEELAIAKNNIIK

Intron Amino Acid Position:

225

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.3

0.57

1.1

74.6

36.4

Major BPS

50.9

0.02

1.1

36.1

Major PPT

100

1.12

0.4

100

Minor 5ss

42.9

-0.8

3.4

65.4

45.7

Minor BPS

48.5

-0

3.6

87.87

37.8

Associated Gene:

Gene:

RUFY2

Ensembl Gene ID:

ENSAPLG00000015834

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036914

16742516 - 16757117

14602

ENSAPLT00000016535

16732492 - 16757161

24670