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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16749084_16750572_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16749084 - 16750572
Intron Length:
1489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TCATTTTGAATA
Flanking Amino Acid:
NYVEELNRQLNSTVSSLHAR
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
92.8
0.96
0.6
92.6
17.4
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
58.4
0.26
1.4
64.09
36.8

Associated Gene:

Gene:
RUFY2
Ensembl Gene ID:
ENSAPLG00000015834
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036914
16742516 - 16757117
14602
ENSAPLT00000016535
16732492 - 16757161
24670