Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16761857_16762481_R

Intron Information:

Intron Rank:

Intron Class:

minor

Intron Phase:

Intron Coordinates:

16761857 - 16762481

Intron Length:

625

Sequence Information:

Terminal Dinucleotides:

AT-AC

5'SS Sequence:

ATG|ATATCCTTT

5'SS Class:

strong_minor

3'SS Sequence:

TAACTTTTGCTAC|A

3'SS Class:

strong_BPS

U2 Branch Point Sequence:

TATTGAA

U12 Branch Point Sequence:

ACTTCCTTAACT

Flanking Amino Acid:

LLCHLQAEAMIFNLPAGAYE

Intron Amino Acid Position:

1013

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

35.4

-0.9

3.4

44.6

Major BPS

79.4

0.73

0.9

69.6

37.5

Major PPT

39.1

-0.6

3.2

54.5

45.3

Minor 5ss

1.63

0.6

96.7

10.2

Minor BPS

89.2

1.31

0.9

94.5

32.7

Associated Gene:

Gene:

DNA2

Ensembl Gene ID:

ENSAPLG00000015576

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016279

16761726 - 16780805

19080