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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16762629_16762769_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16762629 - 16762769
Intron Length:
141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTATGTTTAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TTATGTTTAACA
Flanking Amino Acid:
SFVRNSNEENLGTLLKDWRR
Intron Amino Acid Position:
964

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
76.9
34.5
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
77.5
0.62
1
73.5
40.5
Minor 5ss
38.9
-1.2
3
53.8
43.7
Minor BPS
70.4
0.64
1.7
79.94
36.2

Associated Gene:

Gene:
DNA2
Ensembl Gene ID:
ENSAPLG00000015576
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016279
16761726 - 16780805
19080