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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16765225_16765316_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16765225 - 16765316
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATTTGTA
5'SS Class:
major
3'SS Sequence:
TCTAAATCTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTAAATTAATT
Flanking Amino Acid:
VQLTVQYRMNSKIMSLSNML
Intron Amino Acid Position:
808

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
76
33
Major BPS
83
0.82
0.8
82
24.9
Major PPT
70.8
0.47
0.9
67.1
39
Minor 5ss
42.4
-0.8
3.1
58.1
46.4
Minor BPS
62
0.46
1.8
83.39
37.1

Associated Gene:

Gene:
DNA2
Ensembl Gene ID:
ENSAPLG00000015576
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016279
16761726 - 16780805
19080