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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16765407_16765509_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16765407 - 16765509
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAT
U12 Branch Point Sequence:
TCTTTTGTAACA
Flanking Amino Acid:
LPPLVQNSEARDLGMSESLF
Intron Amino Acid Position:
778

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
80.1
0.68
0.9
76.7
36.2
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
60.2
0.32
2
73.92
38.7

Associated Gene:

Gene:
DNA2
Ensembl Gene ID:
ENSAPLG00000015576
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016279
16761726 - 16780805
19080