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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16765704_16766873_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16765704 - 16766873
Intron Length:
1170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCAATTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TGTCTCTTATTT
Flanking Amino Acid:
TDLEELYNSQPVVATACMGV
Intron Amino Acid Position:
714

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
82.1
24.6
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
80.8
0.69
0.8
77.3
35.6
Minor 5ss
27.3
-2.6
2.7
30.6
42.8
Minor BPS
62.3
0.46
1.6
77.8
38.7

Associated Gene:

Gene:
DNA2
Ensembl Gene ID:
ENSAPLG00000015576
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016279
16761726 - 16780805
19080