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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16769559_16769644_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16769559 - 16769644
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CAACTCTTAATT
Flanking Amino Acid:
LSKLMKDSPVSEKLRNLIID
Intron Amino Acid Position:
565

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
73.4
37.3
Major BPS
100
1.24
0.5
100
0
Major PPT
82.6
0.73
0.8
77.2
30.4
Minor 5ss
38.9
-1.2
2.8
49.3
46.5
Minor BPS
64.7
0.54
1.3
71.1
39.9

Associated Gene:

Gene:
DNA2
Ensembl Gene ID:
ENSAPLG00000015576
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016279
16761726 - 16780805
19080