Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16769762_16770244_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16769762 - 16770244

Intron Length:

483

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATAGAA

5'SS Class:

strong_major

3'SS Sequence:

TGTCATCCTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTAAT

U12 Branch Point Sequence:

ATAGAATTAATT

Flanking Amino Acid:

SATKVSCLLGRNLSKLPKDT

Intron Amino Acid Position:

526

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

73.2

30.9

Major BPS

0.82

0.8

24.9

Major PPT

72.1

0.5

0.9

63.1

39.3

Minor 5ss

29.8

-2.3

3.3

38.4

46.6

Minor BPS

49.9

0.07

1.9

69.68

Associated Gene:

Gene:

DNA2

Ensembl Gene ID:

ENSAPLG00000015576

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016279

16761726 - 16780805

19080