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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16774022_16774328_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16774022 - 16774328
Intron Length:
307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATCGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTGGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAA
U12 Branch Point Sequence:
GTCTACCTAGTT
Flanking Amino Acid:
PVSGTRMDKRELMKLRNQVA
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
66
45.4
Major BPS
69
0.47
1
69.9
32.6
Major PPT
85.5
0.8
0.9
84
31
Minor 5ss
33
-1.9
2.9
41.4
45
Minor BPS
46.5
-0.1
2
66.6
43.9

Associated Gene:

Gene:
DNA2
Ensembl Gene ID:
ENSAPLG00000015576
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016279
16761726 - 16780805
19080