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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16776160_16777637_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16776160 - 16777637
Intron Length:
1478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTAAT
U12 Branch Point Sequence:
GTCTCCTTAATG
Flanking Amino Acid:
IVYGQKYLREMYHLNLKQAE
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
78.2
36.4
Major BPS
74.6
0.61
1.1
75.5
35.1
Major PPT
89.3
0.88
0.7
89
27.8
Minor 5ss
38.5
-1.3
2.8
50.4
39.2
Minor BPS
76.3
0.69
1.3
71.98
41.2

Associated Gene:

Gene:
DNA2
Ensembl Gene ID:
ENSAPLG00000015576
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016279
16761726 - 16780805
19080