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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16784448_16786214_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16784448 - 16786214
Intron Length:
1767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
CTTATTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATTTATTCAATA
Flanking Amino Acid:
GAVLPDSDKCLTMVQTLKYV
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
84.2
33.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
88
0.85
0.8
80.4
37
Minor 5ss
44.6
-0.6
2.9
70.4
39.5
Minor BPS
58.2
0.25
1.7
71.02
35

Associated Gene:

Gene:
SLC25A16
Ensembl Gene ID:
ENSAPLG00000015185
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015843
16784200 - 16799260
15061