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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16786284_16787164_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16786284 - 16787164
Intron Length:
881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTAAGTTTG
5'SS Class:
major
3'SS Sequence:
ATCTCCTCTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TCTGGTTGAACT
Flanking Amino Acid:
GIAGAIAQTISYPLDVTRRR
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.3
71.5
41.1
Major BPS
77.3
0.68
1
81.5
27
Major PPT
75.6
0.58
0.8
69.7
30.5
Minor 5ss
45.3
-0.5
2.8
58.9
40.2
Minor BPS
50.2
0.09
2
71.98
45.3

Associated Gene:

Gene:
SLC25A16
Ensembl Gene ID:
ENSAPLG00000015185
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015843
16784200 - 16799260
15061