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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16787328_16788078_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16787328 - 16788078
Intron Length:
751

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
AATTTCCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
ATAAAATTAAAT
Flanking Amino Acid:
PTVVGMAPYAGFSFFTFGTL
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
82
26.1
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
78
0.63
0.8
75.1
34.9
Minor 5ss
39.7
-1.2
2.8
45.9
43.7
Minor BPS
48.5
-0
1.9
68.56
40.8

Associated Gene:

Gene:
SLC25A16
Ensembl Gene ID:
ENSAPLG00000015185
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015843
16784200 - 16799260
15061