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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16788146_16788664_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16788146 - 16788664
Intron Length:
519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTGTAT
U12 Branch Point Sequence:
TTTTCTTTCAAA
Flanking Amino Acid:
IHAFKMIYTKEGGFSGFYRG
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
82.4
30.8
Major BPS
62.7
0.32
1.4
63.4
44
Major PPT
79.7
0.67
0.9
82
27.2
Minor 5ss
58.1
0.27
2.3
76
39.6
Minor BPS
65.4
0.48
1.8
80.33
35.6

Associated Gene:

Gene:
SLC25A16
Ensembl Gene ID:
ENSAPLG00000015185
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015843
16784200 - 16799260
15061