About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16796454_16798736_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16796454 - 16798736
Intron Length:
2283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGATGG
5'SS Class:
strong_major
3'SS Sequence:
TGCATTGTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TAATTGTTAAAT
Flanking Amino Acid:
QAHNHHYKHLGVFSTLCAVP
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
72.5
39.9
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
65.2
0.34
1.1
60.9
44.5
Minor 5ss
37.3
-1.4
3
47.6
47.9
Minor BPS
54.7
0.23
2.1
75.09
41.2

Associated Gene:

Gene:
SLC25A16
Ensembl Gene ID:
ENSAPLG00000015185
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015843
16784200 - 16799260
15061