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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16798830_16799160_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
16798830 - 16799160
Intron Length:
331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTCCC
5'SS Class:
major
3'SS Sequence:
TCCTCTTGGAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCCCAT
U12 Branch Point Sequence:
TCCTCTTGGAAA
Flanking Amino Acid:
FYWLRSFIAGGVAGCCAKTT
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
65.8
40.2
Major BPS
63.5
0.33
1.2
72.5
34.6
Major PPT
58.3
0.19
1.2
62
37.9
Minor 5ss
28.6
-2.4
3
35.8
41
Minor BPS
49.6
-0
1.6
59.6
40.5

Associated Gene:

Gene:
SLC25A16
Ensembl Gene ID:
ENSAPLG00000015185
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015843
16784200 - 16799260
15061