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Intron Name: Anas_platyrhynchos_platyrhynchos_6_16838002_16850258_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16838002 - 16850258

Intron Length:

12257

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

ATGATTCTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

CTACTTTTATCT

Flanking Amino Acid:

SSQGCPIAKWVIRRSSDEEK

Intron Amino Acid Position:

1545

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.5

0.93

0.9

87.9

29.3

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

0.59

66.5

44.5

Minor 5ss

45.7

-0.5

2.8

45.5

Minor BPS

54.2

0.21

1.6

69.39

41.8

Associated Gene:

Gene:

TET1

Ensembl Gene ID:

ENSAPLG00000024977

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019202

16814986 - 16870989

56004