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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16851615_16855092_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16851615 - 16855092
Intron Length:
3478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAACAT
U12 Branch Point Sequence:
GCTCTCTAAACA
Flanking Amino Acid:
FRLLTDDPKQEELLENNLQT
Intron Amino Acid Position:
1665

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
78.3
36.2
Major BPS
63.2
0.33
1.1
69.6
35.7
Major PPT
89.4
0.89
0.6
84.8
22.8
Minor 5ss
39.6
-1.2
3.3
57.8
40.6
Minor BPS
56.6
0.2
1.7
64.92
41.5

Associated Gene:

Gene:
TET1
Ensembl Gene ID:
ENSAPLG00000024977
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019202
16814986 - 16870989
56004