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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16855183_16855629_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16855183 - 16855629
Intron Length:
447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCTG
5'SS Class:
strong_major
3'SS Sequence:
ATTTCATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GTTCATTTCATT
Flanking Amino Acid:
KLAPEAFQNQVENEHMGPDC
Intron Amino Acid Position:
1695

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.7
44.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81
0.7
0.8
78.7
34.1
Minor 5ss
36.4
-1.5
3.3
49
47.2
Minor BPS
49.1
0.01
1.9
70.98
40.2

Associated Gene:

Gene:
TET1
Ensembl Gene ID:
ENSAPLG00000024977
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019202
16814986 - 16870989
56004