Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16855768_16864312_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16855768 - 16864312

Intron Length:

8545

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTATGTACA

5'SS Class:

strong_major

3'SS Sequence:

CTGTTCCTCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAA

U12 Branch Point Sequence:

GTATTTGTAAAT

Flanking Amino Acid:

THNMHNGSTVVCTLTKEDNR

Intron Amino Acid Position:

1741

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

0.9

75.1

34.3

Major BPS

75.2

0.63

1.1

75.9

36.3

Major PPT

77.6

0.62

0.8

69.3

36.9

Minor 5ss

42.2

-0.9

2.4

48.9

42.2

Minor BPS

49.2

0.02

2.1

70.2

40.7

Associated Gene:

Gene:

TET1

Ensembl Gene ID:

ENSAPLG00000024977

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019202

16814986 - 16870989

56004