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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16893233_16893808_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16893233 - 16893808
Intron Length:
576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAAAA
5'SS Class:
major
3'SS Sequence:
TTATCTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTGCTTTTATCT
Flanking Amino Acid:
AAAAAAALQQQYSQPQQTLY
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1.1
76.9
33.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
83.1
0.74
0.9
80.9
36.4
Minor 5ss
38.3
-1.3
2.9
48.8
46.9
Minor BPS
60.2
0.4
1.6
76.49
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013870
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014530
16892169 - 16903301
11133