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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16895701_16896213_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16895701 - 16896213
Intron Length:
513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
GTAATGTTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTTTTTGTAATG
Flanking Amino Acid:
FVDEDVFFQLSAVKGKTPQV
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.5
36.8
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
72.9
0.51
1
65.5
45.1
Minor 5ss
38.5
-1.3
3.4
55.9
48.3
Minor BPS
58.2
0.12
2
69.97
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013870
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014530
16892169 - 16903301
11133