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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16896329_16896412_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16896329 - 16896412
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATAGA
5'SS Class:
major
3'SS Sequence:
TTTCTGCTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAA
U12 Branch Point Sequence:
TCGTTCACAACT
Flanking Amino Acid:
AQRIQTLPNQNQTQAQPLLK
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
73
37.8
Major BPS
68.5
0.46
1
75.3
29.8
Major PPT
73.4
0.53
1
73.8
36.9
Minor 5ss
40.5
-1.1
2.7
51.4
45.1
Minor BPS
52.9
0.17
1.9
72.62
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013870
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014530
16892169 - 16903301
11133