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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16899055_16900363_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16899055 - 16900363
Intron Length:
1309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTATA
5'SS Class:
major
3'SS Sequence:
ATTTACACACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATCTCATTTACA
Flanking Amino Acid:
PDADHLYSAKVMLMASPSME
Intron Amino Acid Position:
447

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
80.9
32.8
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
66.4
0.37
1
57.8
42.3
Minor 5ss
41.8
-0.9
2.5
51.7
44.8
Minor BPS
58
0.24
1.9
71.03
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013870
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014530
16892169 - 16903301
11133