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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16900478_16901345_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16900478 - 16901345
Intron Length:
868

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTGTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAGAA
U12 Branch Point Sequence:
ACATTCAGAAGA
Flanking Amino Acid:
GFQHPARLVKFLVGMKGKDE
Intron Amino Acid Position:
485

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
84.2
33.9
Major BPS
64.9
0.37
1
61
37.5
Major PPT
82.1
0.72
0.8
76.9
37.3
Minor 5ss
38.7
-1.3
2.9
50.6
45.9
Minor BPS
43.8
-0.4
1.9
52.05
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013870
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014530
16892169 - 16903301
11133