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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16901513_16903219_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16901513 - 16903219
Intron Length:
1707

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTGCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TAATTTTTAAAT
Flanking Amino Acid:
TGIDLSVCTQWMKRKRMMEK
Intron Amino Acid Position:
540

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
86.2
29.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.2
0.72
1
77.1
41.6
Minor 5ss
38.5
-1.3
2.8
49.8
40.3
Minor BPS
68.6
0.66
1.3
78.99
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013870
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014530
16892169 - 16903301
11133