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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16906819_16910171_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16906819 - 16910171
Intron Length:
3353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGCAGC
5'SS Class:
major
3'SS Sequence:
TAATTTCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GATCCCATAATT
Flanking Amino Acid:
DKKEDRDEKKEKDKTQMVTV
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66
0.38
1.3
59.7
45.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
76
0.59
0.8
71
35.3
Minor 5ss
41.2
-1
2.6
52.6
44.2
Minor BPS
62.6
0.48
1.6
77.11
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022191
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018651
16906615 - 16913169
6555