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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16934474_16936271_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16934474 - 16936271
Intron Length:
1798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATGT
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTGTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTATTTTTCATT
Flanking Amino Acid:
LVEQLVKSYPGIAVPSHQIL
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
36.1
Major BPS
100
1.24
0.5
100
0
Major PPT
77.9
0.63
0.9
73.3
36.5
Minor 5ss
39
-1.2
3.2
56.6
47.5
Minor BPS
61.3
0.44
1.7
79.64
37.1

Associated Gene:

Gene:
STOX1
Ensembl Gene ID:
ENSAPLG00000013865
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014439
16933351 - 16939704
6354