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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16941675_16942887_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16941675 - 16942887
Intron Length:
1213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGTA
5'SS Class:
strong_major
3'SS Sequence:
GTTTACCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
AATTACTTGATT
Flanking Amino Acid:
SGDCDSDQEQEMTEEQKEGA
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.6
30.5
Major BPS
75
0.62
1
65.3
41.5
Major PPT
69.7
0.44
1
63.4
38
Minor 5ss
33.4
-1.9
3.6
46.9
48.4
Minor BPS
67
0.62
1.5
79.41
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013022
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013616
16940556 - 16954778
14223