About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16945640_16946197_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16945640 - 16946197
Intron Length:
558

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATCG
5'SS Class:
major
3'SS Sequence:
TCTGTGTTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
AGGTTGTAAAAT
Flanking Amino Acid:
EDILRVAYKKDSEDNPQTLL
Intron Amino Acid Position:
560

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68
37.9
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
71.7
0.49
1.1
74.9
39
Minor 5ss
38.3
-1.3
3
48.8
46.8
Minor BPS
43
-0.4
2.3
59.57
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013022
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013616
16940556 - 16954778
14223