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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16946344_16947392_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16946344 - 16947392
Intron Length:
1049

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAC
U12 Branch Point Sequence:
TTTTGTGTAAGC
Flanking Amino Acid:
RTQKAATTVEHLAIACHWSQ
Intron Amino Acid Position:
609

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.8
85.9
23.8
Major BPS
52.9
0.07
1.1
59.6
32.7
Major PPT
87.3
0.84
0.6
83.5
24.9
Minor 5ss
33.7
-1.9
2.8
42.6
38.4
Minor BPS
46.9
-0.2
2.5
69.26
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013022
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013616
16940556 - 16954778
14223