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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16951563_16951823_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16951563 - 16951823
Intron Length:
261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTGTA
5'SS Class:
major
3'SS Sequence:
TCTTACTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
AATTTCTTACTC
Flanking Amino Acid:
EQRSLLNSDAGFVTMILRCS
Intron Amino Acid Position:
831

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.1
74.8
35.3
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
80.1
0.68
0.7
78
30.5
Minor 5ss
39.2
-1.2
3.4
59
45.5
Minor BPS
62.7
0.38
1.6
69.3
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013022
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013616
16940556 - 16954778
14223