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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16953376_16954220_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16953376 - 16954220
Intron Length:
845

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTGCACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAC
U12 Branch Point Sequence:
TATAACTTGATA
Flanking Amino Acid:
IPVADQKEIEGKWEDSKQCR
Intron Amino Acid Position:
891

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
84.6
33
Major BPS
69.1
0.48
1
70
32.1
Major PPT
69.5
0.44
1
63.7
42.8
Minor 5ss
37.3
-1.4
3
52.4
44.2
Minor BPS
59.9
0.3
1.5
69.2
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013022
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013616
16940556 - 16954778
14223