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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16956106_16957559_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16956106 - 16957559
Intron Length:
1454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGCAACT
5'SS Class:
major
3'SS Sequence:
TTTATCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTCTTTTATC
Flanking Amino Acid:
VDGEHDGDSEELTEEAREGA
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.2
69
41.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
83.9
0.76
0.7
82.1
29.7
Minor 5ss
40.3
-1.1
3.2
58.8
45.4
Minor BPS
72.5
0.69
1.5
82.19
31.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013000
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013530
16955343 - 16966560
11218