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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16960048_16960615_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16960048 - 16960615
Intron Length:
568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TATTTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTTGTTTATTT
Flanking Amino Acid:
FYGGTPYKAQFDLLKIGIDI
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
76.2
34.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
90
0.9
0.7
85.2
29.1
Minor 5ss
37
-1.5
2.8
43.1
43.9
Minor BPS
60.4
0.41
2
83.14
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013000
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013530
16955343 - 16966560
11218