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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16962388_16962934_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16962388 - 16962934
Intron Length:
547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TGAATTTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTAATCTGAATT
Flanking Amino Acid:
DLVIQCSPPKDVDSYIHRSG
Intron Amino Acid Position:
464

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
80.7
33.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
67.6
0.4
1.1
67.8
42.3
Minor 5ss
37.6
-1.4
3
50.5
40
Minor BPS
63.8
0.51
1.4
78.39
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013000
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013530
16955343 - 16966560
11218