About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16963055_16963540_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16963055 - 16963540
Intron Length:
486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
ATACCTTTAACT
Flanking Amino Acid:
DLLKQVEQKAGITFKRIGVP
Intron Amino Acid Position:
504

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
77.9
32.7
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
83.8
0.76
0.8
81.4
35
Minor 5ss
37.9
-1.4
2.9
51.5
44.9
Minor BPS
76.8
0.92
1.1
85.08
34.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013000
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013530
16955343 - 16966560
11218