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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16963615_16964420_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
16963615 - 16964420
Intron Length:
806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATCAACGCTCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATCAACG
Flanking Amino Acid:
IIKASSNDAKKCIEAIPPFA
Intron Amino Acid Position:
528

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
58.7
0.2
1
47.8
40.6
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
60.6
0.19
1.9
72.73
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013000
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013530
16955343 - 16966560
11218