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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16970808_16970915_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16970808 - 16970915
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
AAATGATGAAAT
Flanking Amino Acid:
EKLTDQERSKRFEKAYTHTL
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
71.2
34.2
Major BPS
68
0.45
1
57.8
39
Major PPT
96.4
1.04
0.5
95.9
14.1
Minor 5ss
27.1
-2.6
3.2
35
41.6
Minor BPS
43.5
-0.4
2.1
60.68
41.7

Associated Gene:

Gene:
KIFBP
Ensembl Gene ID:
ENSAPLG00000012980
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013509
16966799 - 16975421
8623