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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16972320_16973791_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16972320 - 16973791
Intron Length:
1472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTCG
5'SS Class:
major
3'SS Sequence:
TTCCACTAACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTCCACTAACT
Flanking Amino Acid:
QAGQVPSAEDNENEQDQQDL
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
66.4
40.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
62.2
0.27
1
56
38.8
Minor 5ss
42.7
-0.8
2.7
56.4
41.7
Minor BPS
63.5
0.5
2
88.18
35.9

Associated Gene:

Gene:
KIFBP
Ensembl Gene ID:
ENSAPLG00000012980
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013509
16966799 - 16975421
8623