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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16982790_16984003_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16982790 - 16984003
Intron Length:
1214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGCCG
5'SS Class:
major
3'SS Sequence:
GCTGCTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTAAC
U12 Branch Point Sequence:
GGGTGGCTAACG
Flanking Amino Acid:
VILFVGCTAQGAPVQKARYK
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.2
57.9
46.7
Major BPS
51.7
0.04
1.3
55.3
40.3
Major PPT
68.7
0.42
0.9
61
35.2
Minor 5ss
36.6
-1.5
3.3
48.4
47.3
Minor BPS
39.2
-0.9
2.5
45.44
46.4

Associated Gene:

Gene:
SRGN
Ensembl Gene ID:
ENSAPLG00000026405
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027725
16982699 - 16984462
1764