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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16984149_16984266_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16984149 - 16984266
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTAAGTGCA
5'SS Class:
major
3'SS Sequence:
GCTGCTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
GTGTAATGAACC
Flanking Amino Acid:
RILPPVADPSPMKSDQMSDI
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.3
66.3
39.6
Major BPS
67.7
0.44
1
58
38.9
Major PPT
73.1
0.52
1
68.7
42
Minor 5ss
34.8
-1.7
3.2
46.2
42.2
Minor BPS
48.8
-0.1
1.9
62.88
41.6

Associated Gene:

Gene:
SRGN
Ensembl Gene ID:
ENSAPLG00000026405
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027725
16982699 - 16984462
1764