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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16986723_16988293_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16986723 - 16988293
Intron Length:
1571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
AACTTTTAACTG
Flanking Amino Acid:
FYDGESVSGKVNISFKQHGK
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
78
38.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
82.3
0.73
0.8
77.5
31.2
Minor 5ss
43.3
-0.7
2.9
58.9
45.5
Minor BPS
42.3
-0.7
1.8
41.17
38.4

Associated Gene:

Gene:
VPS26A
Ensembl Gene ID:
ENSAPLG00000012577
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013104
16984820 - 16994860
10041