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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16988370_16990803_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16988370 - 16990803
Intron Length:
2434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCAACTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAA
U12 Branch Point Sequence:
TCTTCCTCAACT
Flanking Amino Acid:
GIRIEFVGQIELFNDKSNTH
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
73.1
0.58
1
73.8
32.3
Major PPT
69.5
0.44
0.8
63.4
31.6
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
80.2
1.03
1.4
92.41
36.6

Associated Gene:

Gene:
VPS26A
Ensembl Gene ID:
ENSAPLG00000012577
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013104
16984820 - 16994860
10041