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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16990961_16991390_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16990961 - 16991390
Intron Length:
430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTAAC
5'SS Class:
major
3'SS Sequence:
GCTTTCTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
GCTTATATAATT
Flanking Amino Acid:
ESYIGANVRLRYFLKVTIVR
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.1
75.2
34.3
Major BPS
79
0.72
1
78.4
31.2
Major PPT
76.5
0.6
0.8
69.3
36.9
Minor 5ss
38.5
-1.3
2.4
45.6
42.6
Minor BPS
51.8
0.14
1.8
70.41
40.8

Associated Gene:

Gene:
VPS26A
Ensembl Gene ID:
ENSAPLG00000012577
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013104
16984820 - 16994860
10041