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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16991556_16991963_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16991556 - 16991963
Intron Length:
408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTTCGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAC
Flanking Amino Acid:
LHIEFEYNKSKYHLKDVIVG
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
75.2
35.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.2
0.52
1
75
33.6
Minor 5ss
33.8
-1.8
3.2
40.4
40
Minor BPS
76.4
0.81
1.2
82.98
29.8

Associated Gene:

Gene:
VPS26A
Ensembl Gene ID:
ENSAPLG00000012577
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013104
16984820 - 16994860
10041